Index: dam kernel/trunk/doc/Dam kernel - Technical Design/pictures/DAMKernelSequenceAssessment.pdf
===================================================================
diff -u
Binary files differ
Index: dam kernel/trunk/doc/Dam kernel - Technical Design/DAM kernel - Technical Design.tex
===================================================================
diff -u -r115 -r146
--- dam kernel/trunk/doc/Dam kernel - Technical Design/DAM kernel - Technical Design.tex	(.../DAM kernel - Technical Design.tex)	(revision 115)
+++ dam kernel/trunk/doc/Dam kernel - Technical Design/DAM kernel - Technical Design.tex	(.../DAM kernel - Technical Design.tex)	(revision 146)
@@ -79,7 +79,9 @@
 
 \section{DAM components} \label{sec:DamComponents}
 
-\ProgramNamePlusSpace is part of the whole DAM system that contains several components. Please see \autoref{fig-DamComponents} for an overview of the components of DAM. In \citep{DAM_ArchitectureOverall} a description of the overall architecture of the DAM system can be found.
+\ProgramNamePlusSpace is part of the whole DAM system that contains several components. 
+Please see \autoref{fig-DamComponents} for an overview of the components of DAM. 
+In \citep{DAM_ArchitectureOverall} a description of the overall architecture of the DAM system can be found.
 
 \begin{figure}[H]
   \begin{center}
@@ -98,7 +100,9 @@
 These can be seen in see \autoref{fig-DAMKernelComponents} 
 
 All of the submodules inside the Main Modules are completely independent.
-All of the submodules inside the Supporting Modules are also independent. But all these submodules can be used by each of the main modules.
+All of the submodules inside the Supporting Modules are also independent. 
+But all these submodules can be used by each of the main modules. 
+The arrows show the allowed dependencies.
 
 \begin{figure}[H]
   \begin{center}
@@ -114,8 +118,10 @@
 
 \section{Design principles} \label{sec:DesignPrinciples}
 \begin{itemize}
-	\item No circular references between objects. When it is really unavoidable, then do it through a generic interface (e.g.\ IParentObject)
-	\item The calculation will support parallellization. So do not use global variables and avoid using statics.	
+	\item No circular references between objects. 
+	When it is really unavoidable, then do it through a generic interface (e.g.\ IParentObject)
+	\item The calculation will support parallellization. 
+	So do not use global variables and avoid using statics.	
 	\item Failure mechanisms will be connected through wrapper classes, which will share a common IFailureMechanism interface
 	\item Surfaceline adapter classes will share a common ISurfacelineAdapter interface
 	\item The \ProgramNamePlusSpace must provide progress information of the calculation, so clients of the kernel can show a progressbar
@@ -178,7 +184,7 @@
     \includegraphics[width=12cm]{pictures/DAMKernelDataModelLocation.pdf}
   \end{center}
 
-  \caption{\small \ProgramNamePlusSpace kerenl Location object.}
+  \caption{\small \ProgramNamePlusSpace kernel Location object.}
   \label{fig-DAMKernelDataModelLocation}
 \end{figure}
 
@@ -287,21 +293,56 @@
 Adapts the surfaceline by adding a shoulder or enlarging the shouldeer on the inside of the dike.
 \paragraph*{Surfaceline Adapter NWO}
 Adapts the surfaceline by adding a NWO on a specifi place in the surfaceline.
-\subsection{Failure mechanism Calculation Runner}
+\subsection{Calculation Runner}
+\paragraph*{Failure mechanism Calculation Runner}
 This submodule calculates a specific failure mechanism by calling the IFailureMechanism interface of the wrapper implementation.
-\subsection{Design Calculation Runner}
+\paragraph*{Design Calculation Runner}
 This submodule performs a design calculation for a specific failure mechanism by calling the IFailureMechanism interface and several surfaceline adapters through their  ISurfacelineAdaptert interface.
-\subsection{Operational Calculation Runner}
+\paragraph*{Operational Calculation Runner}
 This submodule can perform a calculation based on sensor readings (as time-series). The load on the systems (the waternet) will be based on those sensor readings. This can be used in operational systems like DamLive.
-\subsection{Probabilistic Calculation Runner}
+\paragraph*{Probabilistic Calculation Runner}
 This submodule performs a probabilistic calculation for a specific location and failure mechanism. The outcome is a failure probability for that location and failure mechanism. 
-\subsection{Geometry creator}
+\subsection{General submodules}
+\paragraph*{Geometry creator}
 This submodule combines a surfaceline with a subsoil scenario. The output is a gemetry that can be used by the failure mechanisms to perform a calculation.
-\subsection{Waternet creator}
+\paragraph*{Waternet creator}
 This submodule determines the waternet that will be used by the failure mechanisms. At first only the DAM implementation will be used as a waternet creator. Later on new implementations can be made. E.g.\ specific for each failure mechanism, or an implementation based on a numerical model like DgFlow.
 \subsection{Scripting engine}
 To enable advanced users to experiment with how the \ProgramNamePlusSpace works a Python scripting engine is implemented as a submodule. The scripting engine has acces to the data model and the submodules through well defined interfaces. 
 
+\section{\ProgramNamePlusSpace sequence diagrams} \label{sec:DamKernelSequenceDiagrams}
+In this section the sequence diagrams, showing the use of the submodules are shown.
+
+\subsection{Assessment}
+\begin{figure}[H]
+  \begin{center}
+    \includegraphics[width=15cm]{pictures/DAMKernelSequenceAssessment.pdf}
+  \end{center}
+
+  \caption{\small \ProgramNamePlusSpace Assessment sequence diagram.}
+  \label{fig-DAMKernelSequenceAssessment}
+\end{figure}
+
+\subsection{Assessment Regional}
+\begin{figure}[H]
+  \begin{center}
+    \includegraphics[width=15cm]{pictures/DAMKernelSequenceAssessmentRegional.pdf}
+  \end{center}
+
+  \caption{\small \ProgramNamePlusSpace Regional assessment sequence diagram.}
+  \label{fig-DAMKernelSequenceAssessmentRegional}
+\end{figure}
+
+\subsection{Design}
+\begin{figure}[H]
+  \begin{center}
+    \includegraphics[width=15cm]{pictures/DAMKernelSequenceDesign.pdf}
+  \end{center}
+
+  \caption{\small \ProgramNamePlusSpace Design sequence diagram.}
+  \label{fig-DAMKernelSequenceDesign}
+\end{figure}
+
 %------------------------------------------------------------------------------
 \chapter{Literature}  \label{chapterLiterature}
 
Index: dam kernel/trunk/doc/Dam kernel - Technical Design/pictures/DAMKernelSequenceDesign.pdf
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Index: dam kernel/trunk/doc/Dam kernel - Technical Design/pictures/DAMKernelSequenceAssessmentRegional.pdf
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Index: dam kernel/trunk/doc/UML Diagrams/DAM kernel Sequence Design.uxf
===================================================================
diff -u
--- dam kernel/trunk/doc/UML Diagrams/DAM kernel Sequence Design.uxf	(revision 0)
+++ dam kernel/trunk/doc/UML Diagrams/DAM kernel Sequence Design.uxf	(revision 146)
@@ -0,0 +1,326 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<diagram program="umlet" version="14.2">
+  <zoom_level>10</zoom_level>
+  <element>
+    <id>UMLGeneric</id>
+    <coordinates>
+      <x>90</x>
+      <y>160</y>
+      <w>20</w>
+      <h>170</h>
+    </coordinates>
+    <panel_attributes>
+bg=yellow</panel_attributes>
+    <additional_attributes/>
+  </element>
+  <element>
+    <id>UMLGeneric</id>
+    <coordinates>
+      <x>210</x>
+      <y>40</y>
+      <w>140</w>
+      <h>50</h>
+    </coordinates>
+    <panel_attributes>:Failure Mechanism 
+Calculator
+bg=orange</panel_attributes>
+    <additional_attributes/>
+  </element>
+  <element>
+    <id>UMLGeneric</id>
+    <coordinates>
+      <x>30</x>
+      <y>40</y>
+      <w>140</w>
+      <h>30</h>
+    </coordinates>
+    <panel_attributes>:Assessment Dikes
+bg=orange</panel_attributes>
+    <additional_attributes/>
+  </element>
+  <element>
+    <id>UMLGeneric</id>
+    <coordinates>
+      <x>370</x>
+      <y>40</y>
+      <w>140</w>
+      <h>50</h>
+    </coordinates>
+    <panel_attributes>:Geometry Creator
+bg=orange</panel_attributes>
+    <additional_attributes/>
+  </element>
+  <element>
+    <id>UMLGeneric</id>
+    <coordinates>
+      <x>530</x>
+      <y>40</y>
+      <w>140</w>
+      <h>50</h>
+    </coordinates>
+    <panel_attributes>:Waternet Creator
+bg=orange</panel_attributes>
+    <additional_attributes/>
+  </element>
+  <element>
+    <id>UMLGeneric</id>
+    <coordinates>
+      <x>690</x>
+      <y>40</y>
+      <w>140</w>
+      <h>50</h>
+    </coordinates>
+    <panel_attributes>:Failure Mechanism
+Wrappers
+bg=orange</panel_attributes>
+    <additional_attributes/>
+  </element>
+  <element>
+    <id>UMLGeneric</id>
+    <coordinates>
+      <x>260</x>
+      <y>160</y>
+      <w>20</w>
+      <h>600</h>
+    </coordinates>
+    <panel_attributes>
+bg=yellow</panel_attributes>
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+    <additional_attributes>10.0;10.0;10.0;350.0</additional_attributes>
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+  <element>
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+bg=orange</panel_attributes>
+    <additional_attributes/>
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+    <coordinates>
+      <x>910</x>
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+    <additional_attributes/>
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+    <additional_attributes>10.0;10.0;640.0;10.0</additional_attributes>
+  </element>
+</diagram>
Index: dam kernel/trunk/doc/UML Diagrams/DAM kernel Components.uxf
===================================================================
diff -u -r115 -r146
--- dam kernel/trunk/doc/UML Diagrams/DAM kernel Components.uxf	(.../DAM kernel Components.uxf)	(revision 115)
+++ dam kernel/trunk/doc/UML Diagrams/DAM kernel Components.uxf	(.../DAM kernel Components.uxf)	(revision 146)
@@ -4,28 +4,28 @@
   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>472</x>
-      <y>976</y>
+      <x>808</x>
+      <y>1232</y>
       <w>232</w>
       <h>64</h>
     </coordinates>
     <panel_attributes>symbol=component
 
 Surfaceline Adapter Height
-group=9</panel_attributes>
+group=12</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>152</x>
+      <x>144</x>
       <y>448</y>
       <w>208</w>
       <h>64</h>
     </coordinates>
     <panel_attributes>symbol=component
 
-Primary design calculation
+Design calculation
 group=5</panel_attributes>
     <additional_attributes/>
   </element>
@@ -39,20 +39,20 @@
     </coordinates>
     <panel_attributes>symbol=component
 
-Primary assessment calculation
+Assessment calculation
 group=4</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
     <id>UMLDeployment</id>
     <coordinates>
-      <x>448</x>
-      <y>928</y>
-      <w>552</w>
-      <h>528</h>
+      <x>472</x>
+      <y>920</y>
+      <w>520</w>
+      <h>208</h>
     </coordinates>
-    <panel_attributes>Common modules
-group=9</panel_attributes>
+    <panel_attributes>Calculation Runners
+group=10</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
@@ -63,7 +63,7 @@
       <w>232</w>
       <h>352</h>
     </coordinates>
-    <panel_attributes>Assessment Primary Dikes
+    <panel_attributes>Assessment Dikes
 group=4</panel_attributes>
     <additional_attributes/>
   </element>
@@ -112,52 +112,52 @@
   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>472</x>
-      <y>1056</y>
+      <x>808</x>
+      <y>1312</y>
       <w>232</w>
       <h>64</h>
     </coordinates>
     <panel_attributes>symbol=component
 
 Surfaceline Adapter Slope
-group=9</panel_attributes>
+group=12</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>720</x>
-      <y>1056</y>
+      <x>808</x>
+      <y>1472</y>
       <w>232</w>
       <h>64</h>
     </coordinates>
     <panel_attributes>symbol=component
 
 Surfaceline Adapter Shoulder
-group=9</panel_attributes>
+group=12</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>472</x>
-      <y>1136</y>
+      <x>488</x>
+      <y>960</y>
       <w>232</w>
       <h>64</h>
     </coordinates>
     <panel_attributes>symbol=component
 
 Failure mechanism Calculation Runner
-group=9</panel_attributes>
+group=10</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
     <id>UMLDeployment</id>
     <coordinates>
       <x>144</x>
-      <y>928</y>
+      <y>1184</y>
       <w>280</w>
-      <h>528</h>
+      <h>368</h>
     </coordinates>
     <panel_attributes>Failure mechanism wrappers
 group=1</panel_attributes>
@@ -178,20 +178,20 @@
   <element>
     <id>UMLDeployment</id>
     <coordinates>
-      <x>136</x>
+      <x>128</x>
       <y>408</y>
       <w>248</w>
       <h>352</h>
     </coordinates>
-    <panel_attributes>Design Primary Dikes
+    <panel_attributes>Design Dikes
 group=5</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
     <id>UMLGeneric</id>
     <coordinates>
       <x>168</x>
-      <y>968</y>
+      <y>1224</y>
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       <h>64</h>
     </coordinates>
@@ -205,7 +205,7 @@
     <id>UMLGeneric</id>
     <coordinates>
       <x>168</x>
-      <y>1048</y>
+      <y>1304</y>
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@@ -219,7 +219,7 @@
     <id>UMLGeneric</id>
     <coordinates>
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-      <y>1128</y>
+      <y>1384</y>
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@@ -232,59 +232,58 @@
   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>720</x>
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     </coordinates>
     <panel_attributes>symbol=component
 
 Surfaceline Adapter NWO
 (NEW)
-group=9</panel_attributes>
+group=12</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>720</x>
-      <y>1136</y>
+      <x>168</x>
+      <y>920</y>
       <w>232</w>
       <h>64</h>
     </coordinates>
     <panel_attributes>symbol=component
 
 Scripting engine
-(NEW)
-group=9</panel_attributes>
+(NEW)</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>720</x>
-      <y>1296</y>
+      <x>496</x>
+      <y>1224</y>
       <w>232</w>
       <h>64</h>
     </coordinates>
     <panel_attributes>symbol=component
 
 Geometry creator
-group=9</panel_attributes>
+group=11</panel_attributes>
     <additional_attributes/>
   </element>
   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>720</x>
-      <y>1216</y>
+      <x>496</x>
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       <w>232</w>
       <h>64</h>
     </coordinates>
     <panel_attributes>symbol=component
 
 Waternet creator
-group=9</panel_attributes>
+group=11</panel_attributes>
     <additional_attributes/>
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   <element>
@@ -295,7 +294,7 @@
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       <h>352</h>
     </coordinates>
-    <panel_attributes>NWO Calculation Primary Dikes
+    <panel_attributes>NWO Calculation Dikes
 (NEW)
 group=6</panel_attributes>
     <additional_attributes/>
@@ -310,7 +309,7 @@
     </coordinates>
     <panel_attributes>symbol=component
 
-Primary NWO calculation
+NWO calculation
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     <coordinates>
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 Design Calculation Runner
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     <panel_attributes>symbol=component
 
 Operation Calculation Runner
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   <element>
     <id>UMLGeneric</id>
     <coordinates>
-      <x>472</x>
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     <panel_attributes>symbol=component
 
 Probabilistic Calculation Runner
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+    <additional_attributes>260.0;10.0;10.0;180.0</additional_attributes>
+  </element>
 </diagram>
Index: dam kernel/trunk/doc/Dam kernel - Technical Design/pictures/DAMKernelComponents.pdf
===================================================================
diff -u -r115 -r146
Binary files differ
Index: dam kernel/trunk/doc/UML Diagrams/DAM kernel Sequence Assessment.uxf
===================================================================
diff -u
--- dam kernel/trunk/doc/UML Diagrams/DAM kernel Sequence Assessment.uxf	(revision 0)
+++ dam kernel/trunk/doc/UML Diagrams/DAM kernel Sequence Assessment.uxf	(revision 146)
@@ -0,0 +1,269 @@
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+  <element>
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Index: dam kernel/trunk/doc/UML Diagrams/DAM kernel Sequence Assessment Regional.uxf
===================================================================
diff -u
--- dam kernel/trunk/doc/UML Diagrams/DAM kernel Sequence Assessment Regional.uxf	(revision 0)
+++ dam kernel/trunk/doc/UML Diagrams/DAM kernel Sequence Assessment Regional.uxf	(revision 146)
@@ -0,0 +1,384 @@
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+  </element>
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+    <additional_attributes/>
+  </element>
+  <element>
+    <id>Relation</id>
+    <coordinates>
+      <x>872</x>
+      <y>176</y>
+      <w>24</w>
+      <h>408</h>
+    </coordinates>
+    <panel_attributes>lt=.</panel_attributes>
+    <additional_attributes>10.0;10.0;10.0;490.0</additional_attributes>
+  </element>
+  <element>
+    <id>Relation</id>
+    <coordinates>
+      <x>992</x>
+      <y>176</y>
+      <w>24</w>
+      <h>520</h>
+    </coordinates>
+    <panel_attributes>lt=.</panel_attributes>
+    <additional_attributes>10.0;10.0;10.0;630.0</additional_attributes>
+  </element>
+  <element>
+    <id>Relation</id>
+    <coordinates>
+      <x>360</x>
+      <y>584</y>
+      <w>528</w>
+      <h>24</h>
+    </coordinates>
+    <panel_attributes>lt=&lt;&lt;&lt;-</panel_attributes>
+    <additional_attributes>640.0;10.0;10.0;10.0</additional_attributes>
+  </element>
+  <element>
+    <id>Relation</id>
+    <coordinates>
+      <x>360</x>
+      <y>696</y>
+      <w>648</w>
+      <h>24</h>
+    </coordinates>
+    <panel_attributes>lt=&lt;&lt;&lt;-</panel_attributes>
+    <additional_attributes>790.0;10.0;10.0;10.0</additional_attributes>
+  </element>
+  <element>
+    <id>Relation</id>
+    <coordinates>
+      <x>360</x>
+      <y>632</y>
+      <w>528</w>
+      <h>24</h>
+    </coordinates>
+    <panel_attributes>lt=&lt;&lt;&lt;-</panel_attributes>
+    <additional_attributes>10.0;10.0;640.0;10.0</additional_attributes>
+  </element>
+  <element>
+    <id>Relation</id>
+    <coordinates>
+      <x>360</x>
+      <y>752</y>
+      <w>648</w>
+      <h>24</h>
+    </coordinates>
+    <panel_attributes>lt=&lt;&lt;&lt;-</panel_attributes>
+    <additional_attributes>10.0;10.0;790.0;10.0</additional_attributes>
+  </element>
+</diagram>