Index: DamEngine/trunk/src/Deltares.DamEngine.Calculators/KernelWrappers/Common/SoilProfile2DHelper.cs
===================================================================
diff -u -r5836 -r5919
--- DamEngine/trunk/src/Deltares.DamEngine.Calculators/KernelWrappers/Common/SoilProfile2DHelper.cs	(.../SoilProfile2DHelper.cs)	(revision 5836)
+++ DamEngine/trunk/src/Deltares.DamEngine.Calculators/KernelWrappers/Common/SoilProfile2DHelper.cs	(.../SoilProfile2DHelper.cs)	(revision 5919)
@@ -80,6 +80,9 @@
             return true;
         }
         
+        // The inner loops are removed otherwise in case of "Aquitard inner loop in aquifer" the method
+        // IsAtLeastOneIsolatedInBetweenAquiferPresent will return True because the number of aquifers in the first crossSection
+        // cutting the inner loop is higher than in the previousCrossSection outside the inner loop.
         SoilProfile2D soilProfileWithoutInnerLoops = CreateSoilProfileWithoutInnerLoops(soilProfile);
         double[] xCoordinates = DetermineAllXCoordinatesOfSoilProfile(soilProfileWithoutInnerLoops);
         var previousCount = 0;