Index: build/Ringtoets.proj
===================================================================
diff -u -r0a988db8b6f8f92734ed38d2524f1ef7155ea394 -r1934c8f89ca105e022efa5d59331cff8360b1b0f
--- build/Ringtoets.proj	(.../Ringtoets.proj)	(revision 0a988db8b6f8f92734ed38d2524f1ef7155ea394)
+++ build/Ringtoets.proj	(.../Ringtoets.proj)	(revision 1934c8f89ca105e022efa5d59331cff8360b1b0f)
@@ -16,18 +16,19 @@
     <Exec Command="assembly_insert_version.cmd ..\..\Core\Common\src\Core.Common.Version GlobalAssembly.cs Ringtoets.doxygen.svn Ringtoets.doxygen" WorkingDirectory="Technical_documentation" />
   </Target>
   
-  <Target Name="Doxygen" DependsOnTargets="AssemblyVersion">
+  <Target Name="RunDoxygen" DependsOnTargets="AssemblyVersion">
     <MakeDir Directories="$(DoxygenOutputDirectory)" />
-    <Exec Command="Technical_documentation\Doxygen\bin\doxygen.exe Technical_documentation\Ringtoets.doxygen" />
-	<Exec Command="pdflatex.exe -shell-escape -interaction=nonstopmode refman.tex>nul" WorkingDirectory="..\target\Technical_documentation\latex" IgnoreExitCode="true" />
-	<Exec Command="makeindex.exe refman.idx>nul" WorkingDirectory="..\target\Technical_documentation\latex" IgnoreExitCode="true"/>
-	<Exec Command="pdflatex.exe -shell-escape -interaction=nonstopmode refman.tex>nul" WorkingDirectory="..\target\Technical_documentation\latex" IgnoreExitCode="true"/>
-	<Exec Command="ren refman.pdf Technical_documentation.pdf" WorkingDirectory="..\target\Technical_documentation\latex"/>
+    <Exec Command="Technical_documentation\Doxygen\bin\doxygen.exe Technical_documentation\Ringtoets.doxygen"/>
   </Target>
   
-  <Target Name="Cleanup" DependsOnTargets="Doxygen">
-    <Delete Files="Technical_documentation\refman.log"/>
-    <Delete Files="Technical_documentation\texput.log"/>
+   <Target Name="RunPDF2LaTeX" DependsOnTargets="RunDoxygen">
+	<Exec Command='$(MSBuildProjectDirectory)\Technical_documentation\replace_string_in_file.cmd "pdflatex " "pdflatex.exe -quiet -shell-escape -interaction=batchmode " "make.bat" "makeDeltares.bat"' WorkingDirectory="$(DoxygenOutputDirectory)latex"/>
+	<Exec Command='$(MSBuildProjectDirectory)\Technical_documentation\replace_string_in_file.cmd "setcounter{tocdepth}{3}" "setcounter{tocdepth}{2}" "refman.tex"' WorkingDirectory="$(DoxygenOutputDirectory)latex"/>
+	<Exec Command="makeDeltares.bat > makeDeltares.log" WorkingDirectory="$(DoxygenOutputDirectory)latex" IgnoreExitCode="true"/>
   </Target>
-
+  
+  <Target Name="TechnicalDocumentation" DependsOnTargets="RunPDF2LaTeX">
+	<Exec Command="ren refman.pdf Technical_documentation.pdf" WorkingDirectory="..\target\Technical_documentation\latex"/>
+  </Target>
+  
 </Project>
Index: build/Technical_documentation/Ringtoets.doxygen.svn
===================================================================
diff -u -re0537274498ef642264fcd45c5f666dfbc88a729 -r1934c8f89ca105e022efa5d59331cff8360b1b0f
--- build/Technical_documentation/Ringtoets.doxygen.svn	(.../Ringtoets.doxygen.svn)	(revision e0537274498ef642264fcd45c5f666dfbc88a729)
+++ build/Technical_documentation/Ringtoets.doxygen.svn	(.../Ringtoets.doxygen.svn)	(revision 1934c8f89ca105e022efa5d59331cff8360b1b0f)
@@ -844,9 +844,10 @@
 # Note that the wildcards are matched against the file with absolute path, so to
 # exclude all test directories for example use the pattern */test/*
 
+# Ignore demo files and prevent Doxygen from processing compiled files
 EXCLUDE_PATTERNS       = */test/* \
-						 */demo/* # Ignore demo files
-						 */obj/* #to prevent Doxygen from processing compiled files
+						 */demo/* \
+						 */obj/*
 
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
 # (namespaces, classes, functions, etc.) that should be excluded from the
Index: build/Technical_documentation/build-doc.cmd
===================================================================
diff -u -r293be5aa0c9cfb58fea075f0ce6943fdfb310406 -r1934c8f89ca105e022efa5d59331cff8360b1b0f
--- build/Technical_documentation/build-doc.cmd	(.../build-doc.cmd)	(revision 293be5aa0c9cfb58fea075f0ce6943fdfb310406)
+++ build/Technical_documentation/build-doc.cmd	(.../build-doc.cmd)	(revision 1934c8f89ca105e022efa5d59331cff8360b1b0f)
@@ -1 +1 @@
-C:\Windows\Microsoft.NET\Framework\v4.0.30319\MSBuild.exe ../Ringtoets.proj /property:StartUsingCommandLine=true /t:Doxygen /m /v:m /nr:true
+C:\Windows\Microsoft.NET\Framework\v4.0.30319\MSBuild.exe ../Ringtoets.proj /property:StartUsingCommandLine=true /t:CleanupDoxygen /m /v:m /nr:true
Index: build/Technical_documentation/replace_string_in_file.cmd
===================================================================
diff -u
--- build/Technical_documentation/replace_string_in_file.cmd	(revision 0)
+++ build/Technical_documentation/replace_string_in_file.cmd	(revision 1934c8f89ca105e022efa5d59331cff8360b1b0f)
@@ -0,0 +1,51 @@
+REM Replaces text by text from subject to outfile
+@ECHO off
+
+IF "%~1" NEQ "" IF "%~2" NEQ "" IF "%~3" NEQ "" (
+	SET SEARCH=%1
+	SET REPLACE=%2
+	SET SUBJECT=%3
+	IF "%~4" NEQ ""  (
+		SET OUTFILE=%4
+	) ELSE (
+		SET OUTFILE=%3
+	)	
+) ELSE (
+	ECHO "invalid arguments: [search] [replace] [subject] ([outfile])"
+	GOTO EOF
+)
+
+REM Cleanup arguments
+SET SEARCH=%SEARCH:"=%
+SET REPLACE=%REPLACE:"=%
+SET SUBJECT=%SUBJECT:"=%
+SET OUTFILE=%OUTFILE:"=%
+
+SET TEMPOUTFILE=%OUTFILE%.temp
+
+ECHO Replace "%SEARCH%" with "%REPLACE%" in "%SUBJECT%", save as "%OUTFILE%"
+
+
+IF NOT EXIST %SUBJECT% (
+    ECHO File does not exist "%SUBJECT%"
+    GOTO EOF
+)
+
+REM Remove outfile
+IF %SUBJECT% NEQ %OUTFILE% IF EXIST %OUTFILE% (
+	ECHO removing "%OUTFILE%"
+	DEL %OUTFILE%
+)
+
+REM Replace Text
+FOR /f "tokens=1,* delims=�" %%A IN ( '"type %SUBJECT%"') DO (
+	SET string=%%A
+	setlocal enabledelayedexpansion
+    SET modified=!string:%SEARCH%=%REPLACE%!
+    ECHO !modified! >> %TEMPOUTFILE%
+	endlocal
+)
+
+MOVE /Y %TEMPOUTFILE% %OUTFILE%
+
+:EOF