SD_Toolbox

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Commits this week: 0
Total Committers: 4
Last Commit: 21 Oct 20
Commits this week: 0
Total Lines of Code (LoC): 18,020
Net change in LoC this week: 0

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6 properties
  • bugtraq:label = Jira Issue-ID
  • bugtraq:logregex = Issue \[([A-Za-z]+-\d+)\]
  • bugtraq:message = Related to Issue [%BUGID%]
  • bugtraq:number = false
  • bugtraq:url = https://issuetracker.deltares.nl/browse/%BUGID%
  • bugtraq:warnifnoissue = true
  • last updated a few seconds ago
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Constraints: committers
 
Constraints: files
Constraints: dates
Wednesday 16 Oct 2019
5:22 pm

tiotto

Created a unified era5 extraction method with matching tests and logic for waves, wind and slp.

Related to Issue [SDTOOLBOX-24]

Options
    • -0
    • +68
    /trunk/tests/test_extract_data.py
  2. /trunk/tests/test_data/Hs
    • -14
    • +16
    /trunk/tests/test_output_data.py
    • -0
    • +125
    /trunk/tests/test_extract_data_era5.py
    • -0
    • +332
    /trunk/SDToolBox/extract_data_era5.py
    • -9
    • +8
    /trunk/tests/test_extract_slp.py
    • -0
    • +56
    /trunk/SDToolBox/extract_data.py
3:50 pm

Carles Soriano Perez

Corrected input data property, instead of a dictionary we expect a list of variable names.

Related to Issue [SDTOOLBOX-17]

Options
    • -3
    • +3
    /trunk/SDToolBox/outputmessages.py
    • -16
    • +8
    /trunk/tests/test_output_data.py
    • -7
    • +20
    /trunk/SDToolBox/extract_waves.py
    • -13
    • +6
    /trunk/tests/test_extract_waves.py
    • -1
    • +1
    /trunk/SDToolBox/data_acquisition.py
3:28 pm

Carles Soriano Perez

Now we can generate the output as a temporary file, without having to give all the parameters.

Related to Issue [SDTOOLBOX-22]

Options
    • -1
    • +53
    /trunk/tests/test_output_data.py
    • -23
    • +42
    /trunk/SDToolBox/data_acquisition.py
    • -0
    • +3
    /trunk/SDToolBox/outputmessages.py
    • -12
    • +0
    /trunk/SDToolBox/extract_waves.py
2:26 pm

Carles Soriano Perez

Updated input data to require the variable dictionary.

Related to Issue [SDTOOLBOX-22]

Options
    • -4
    • +9
    /trunk/SDToolBox/outputmessages.py
    • -28
    • +79
    /trunk/tests/test_extract_waves.py
    • -2
    • +2
    /trunk/tests/test_extract_slp.py
    • -1
    • +9
    /trunk/tests/test_output_data.py
    • -14
    • +12
    /trunk/SDToolBox/extract_waves.py
    • -0
    • +1
    /trunk/SDToolBox/data_acquisition.py
1:51 pm

Carles Soriano Perez

Updated dummy wave file, now we do not create variables for those which are empty.

Related to Issue [SDTOOLBOX-22]

Options
    • -8
    • +17
    /trunk/SDToolBox/data_acquisition.py
    • binary
    /trunk/tests/test_data/system_tests_nc/dummy_wave_file.nc
    • -5
    • +5
    /trunk/tests/test_output_data.py
1:21 pm

tiotto

Fixed some tests

Related to Issue [SDTOOLBOX-20]

Options
    • -3
    • +3
    /trunk/tests/test_extract_slp.py
    • -42
    • +43
    /trunk/SDToolBox/extract_sea_level_pressure_EARTH.py
    • -9
    • +9
    /trunk/tests/test_extract_waves.py
11:53 am

Carles Soriano Perez

Generation of output works now given a netcdf file path, it also generates an xarray.

Extended functionality to directly call to generate output (does both netcdf and xarray).

Related to Issue [SDTOOLBOX-22]

Options
    • -5
    • +4
    /trunk/tests/test_extract_waves.py
  2. /trunk/tests/test_data/system_tests_nc
    • -43
    • +52
    /trunk/tests/test_output_data.py
    • -33
    • +45
    /trunk/SDToolBox/data_acquisition.py
    • binary
    /trunk/tests/test_data/system_tests_nc/dummy_wave_file.nc
11:09 am

Carles Soriano Perez

Corrected reference file, it was getting the wrong assumption.

Related to Issue [SDTOOLBOX-17]

Options
    • -9
    • +10
    /trunk/SDToolBox/extract_waves.py
10:33 am

Carles Soriano Perez

Corrected extraction of time array.

Related to Issue [SDTOOLBOX-22]

Options
    • -1
    • +1
    /trunk/SDToolBox/extract_waves.py
    • -6
    • +9
    /trunk/SDToolBox/data_acquisition.py
9:46 am

Carles Soriano Perez

Small refactoring towards creation of netcdf.

Related to Issue [SDTOOLBOX-22]

Options
    • -8
    • +16
    /trunk/SDToolBox/data_acquisition.py
    • -1
    • +0
    /trunk/SDToolBox/extract_waves.py
    • -12
    • +10
    /trunk/tests/test_output_data.py
Tuesday 15 Oct 2019
4:57 pm

tiotto

Added sea level pressure with OutputData

Related to Issue [SDTOOLBOX-20]

Options
    • -4
    • +4
    /trunk/tests/test_extract_slp.py
    • -31
    • +131
    /trunk/SDToolBox/extract_sea_level_pressure_era5.py
    • -21
    • +73
    /trunk/SDToolBox/extract_sea_level_pressure_EARTH.py
4:55 pm

Carles Soriano Perez

Added logic to create a xarray from the netcdf, added logic to set dictionary values into the output netcdf.

Related to Issue [SDTOOLBOX-22]

Options
    • -3
    • +68
    /trunk/tests/test_output_data.py
    • -22
    • +46
    /trunk/SDToolBox/data_acquisition.py
4:04 pm

Carles Soriano Perez

Small code correction to dynamically search for a reference file.

Related to Issue [SDTOOLBOX-17]

Options
    • -3
    • +12
    /trunk/SDToolBox/extract_waves.py
3:30 pm

Carles Soriano Perez

Corrected code to generate a valid netcdf. Set error messages in outputmessages.py

Fixed tests.

Related to Issue [SDTOOLBOX-22]

Options
    • -43
    • +65
    /trunk/SDToolBox/data_acquisition.py
    • -31
    • +54
    /trunk/tests/test_output_data.py
    • -1
    • +2
    /trunk/SDToolBox/outputmessages.py
    • -0
    • +1
    /trunk/SDToolBox/extract_waves.py
2:11 pm

Carles Soriano Perez

Readded extract waves and adapted system test.

Related to Issue [SDTOOLBOX-17]

Options
    • -0
    • +211
    /trunk/SDToolBox/extract_waves.py
    • -3
    • +7
    /trunk/tests/test_extract_waves.py
2:09 pm

Carles Soriano Perez

Removed file for later adding (to trigger a new version on Crucible).

Related to Issue [SDTOOLBOX-17]

Options
    • -211
    • +0
    /trunk/SDToolBox/extract_waves.py
1:59 pm

Carles Soriano Perez

Fixed the output data structure.

Related to Issue [SDTOOLBOX-22]

Options
    • -11
    • +8
    /trunk/SDToolBox/data_acquisition.py
    • -4
    • +5
    /trunk/SDToolBox/extract_waves.py
    • -3
    • +6
    /trunk/tests/test_extract_waves.py
1:48 pm

Carles Soriano Perez

Created code to generate a default output structure, adapted it to SDTOOLBOX-20.

Related to Issue [SDTOOLBOX-22]

Options
    • -49
    • +111
    /trunk/SDToolBox/extract_waves.py
    • -109
    • +86
    /trunk/SDToolBox/data_acquisition.py
    • -4
    • +5
    /trunk/tests/test_extract_waves.py
Monday 14 Oct 2019
6:10 pm

Carles Soriano Perez

modified output generation as we need it matrix-shaped.

Related to Issue [SD_TOOLBOX-22]

Options
    • -9
    • +22
    /trunk/SDToolBox/extract_waves.py
5:52 pm

alvareza

Added time extraction

Added variable extraction and concatenation

Related to Issue [SDTOOLBOX-22]

Options
    • -3
    • +12
    /trunk/SDToolBox/extract_waves.py
4:48 pm

Carles Soriano Perez

Extended output tests.

Related to Issue [SD_TOOLBOX-22]

Options
    • -2
    • +1
    /trunk/SDToolBox/extract_waves.py
    • -0
    • +12
    /trunk/SDToolBox/data_acquisition.py
    • -0
    • +62
    /trunk/tests/test_output_data.py
4:17 pm

tiotto

Modified extract sea level pressure it now uses the same function as waves.

Added tests.

Related to Issue [SDTOOLBOX-20]

Options
    • -2
    • +67
    /trunk/tests/test_extract_waves.py
    • -1
    • +0
    /trunk/SDToolBox/data_acquisition.py
    • -18
    • +13
    /trunk/tests/test_extract_slp.py
    • -58
    • +36
    /trunk/SDToolBox/extract_sea_level_pressure_era5.py
4:05 pm

Carles Soriano Perez

Small correction.

Related to Issue [SD_TOOLBOX-22]

Options
    • -1
    • +1
    /trunk/SDToolBox/extract_waves.py
3:57 pm

Carles Soriano Perez

Extended extraction of waves and output data.

Related to Issue [SD_TOOLBOX-22]

Options
    • -58
    • +20
    /trunk/tests/test_extract_waves.py
    • -16
    • +29
    /trunk/SDToolBox/extract_waves.py
    • -2
    • +4
    /trunk/SDToolBox/data_acquisition.py
2:14 pm

Carles Soriano Perez

Added lat and lon values to be set.

Related to Issue [SD_TOOLBOX-22]

Options
    • -75
    • +101
    /trunk/SDToolBox/data_acquisition.py
1:45 pm

Carles Soriano Perez

Class OutputData for wave values.

Related to Issue [SD_TOOLBOX-22]

Options
    • -0
    • +1
    /trunk/tests/test_extract_slp.py
    • -2
    • +2
    /trunk/tests/test_data_acquisition.py
    • -1
    • +1
    /trunk/SDToolBox/extract_waves.py
    • -2
    • +0
    /trunk/SDToolBox/extract_sea_level_pressure_era5.py
    • -6
    • +413
    /trunk/SDToolBox/data_acquisition.py
Friday 11 Oct 2019
4:57 pm

tiotto

Added extract sea level pressure. In progress.

Related to Issue [SDTOOLBOX-20]

Options
    • -0
    • +35
    /trunk/tests/test_extract_slp.py
    • -0
    • +125
    /trunk/SDToolBox/extract_sea_level_pressure_era5.py
    • -0
    • +55
    /trunk/SDToolBox/extract_sea_level_pressure_EARTH.py
    • -51
    • +15
    /trunk/tests/test_extract_waves.py
  5. /trunk/tests/test_data/Hs
    • -1
    • +1
    /trunk/SDToolBox/extract_waves.py
Thursday 10 Oct 2019
10:03 pm

Carles Soriano Perez

Added logic to extract collection of waves era5 subset. Adapted tests.

Related to Issue [SDTOOLBOX-17]

Options
    • -98
    • +0
    /trunk/tests/test_extract_waves_era5.py
    • -10
    • +10
    /trunk/tests/test_data_acquisition.py
    • -0
    • +141
    /trunk/tests/test_extract_waves.py
    • -89
    • +0
    /trunk/SDToolBox/extract_waves_era5.py
    • -17
    • +43
    /trunk/SDToolBox/data_acquisition.py
    • -0
    • +4
    /trunk/setup.py
    • -0
    • +114
    /trunk/SDToolBox/extract_waves.py
5:28 pm

tiotto

Added extract waves era5 and test

Related to Issue [SDTOOLBOX-17]

Options
    • -0
    • +98
    /trunk/tests/test_extract_waves_era5.py
  2. /trunk/tests/test_data/netCDF_dummy_data
    • -0
    • +89
    /trunk/SDToolBox/extract_waves_era5.py
    • binary
    /trunk/tests/test_data/netCDF_dummy_data/era5_Global_Hs_1980.nc
3:16 pm

Carles Soriano Perez

Extended test dataset and corrected wrong python code.

Related to Issue [SDTOOLBOX-15]

Options
    • -25
    • +59
    /trunk/tests/test_data_acquisition.py
    • -2
    • +2
    /trunk/SDToolBox/data_acquisition.py