SD_Toolbox

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Commits this week: 0
Total Committers: 4
Last Commit: 21 Oct 20
Commits this week: 0
Total Lines of Code (LoC): 18,020
Net change in LoC this week: 0

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6 properties
  • bugtraq:label = Jira Issue-ID
  • bugtraq:logregex = Issue \[([A-Za-z]+-\d+)\]
  • bugtraq:message = Related to Issue [%BUGID%]
  • bugtraq:number = false
  • bugtraq:url = https://issuetracker.deltares.nl/browse/%BUGID%
  • bugtraq:warnifnoissue = true
  • last updated a few seconds ago
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Constraints: dates
Thursday 24 Oct 2019
8:32 am

Carles Soriano Perez

Update of setup and environment to avoid HDF5 error on TeamCity
Options
    • -0
    • +1
    /trunk/environment.yml
    • -3
    • +4
    /trunk/setup.py
Wednesday 23 Oct 2019
5:28 pm

Carles Soriano Perez

Fixed simple feature spatial resampling.

Related to Issue [SDTOOLBOX-28]

Options
    • -1
    • +2
    /trunk/SDToolBox/output_data.py
    • -16
    • +68
    /trunk/SDToolBox/data_processing.py
    • -0
    • +1
    /trunk/tests/test_output_data.py
    • -9
    • +77
    /trunk/tests/test_data_processing.py
4:19 pm

tiotto

fixed compute PCA test

Related to Issue [SDTOOLBOX-30]

Options
    • -3
    • +3
    /trunk/SDToolBox/data_processing.py
    • -25
    • +4
    /trunk/tests/test_data_processing.py
3:53 pm

tiotto

updated calculation of derivatives and PCA. work in progress

Related to Issue [SDTOOLBOX-32]

Options
    • -22
    • +24
    /trunk/SDToolBox/data_processing.py
    • -1
    • +2
    /trunk/SDToolBox/output_messages.py
    • -36
    • +36
    /trunk/tests/test_data_processing.py
2:37 pm

Carles Soriano Perez

Improved the extraction of data for gridded. Now we set correctly the latitude / longitudes. Added gridded an non gridded test data.

Related to Issue [SDTOOLBOX-24]

Options
    • binary
    /trunk/tests/test_data/system_tests_nc/dummy_hs_gridded.nc
    • -4
    • +39
    /trunk/SDToolBox/extract_data.py
    • -2
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    /trunk/SDToolBox/input_data.py
    • binary
    /trunk/tests/test_data/system_tests_nc/dummy_hs_non_gridded.nc
    • -2
    • +7
    /trunk/SDToolBox/output_data.py
9:59 am

Carles Soriano Perez

Improved the input data class with some auxilair methods to extract information about variables. Adapted tests and improved the output data method for gridded inputs.

Related to Issue [SDTOOLBOX-24]

Options
    • -0
    • +8
    /trunk/SDToolBox/extract_data.py
    • -2
    • +38
    /trunk/tests/test_output_data.py
    • -1
    • +20
    /trunk/tests/test_input_data.py
    • -1
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    /trunk/tests/test_extract_data.py
    • -19
    • +20
    /trunk/SDToolBox/output_data.py
    • -3
    • +4
    /trunk/SDToolBox/input_data.py
Tuesday 22 Oct 2019
5:28 pm

tiotto

added aggregation methods for atmospheric data. work in progress

Related to Issue [SDTOOLBOX-32]

Options
    • -9
    • +81
    /trunk/tests/test_data_processing.py
    • -1
    • +9
    /trunk/tests/test_output_data.py
    • -8
    • +91
    /trunk/SDToolBox/data_processing.py
5:01 pm

Carles Soriano Perez

Added spatial resampling and a simple test for data processing.

Related to Issue [SDTOOLBOX-28]

Options
    • -1
    • +5
    /trunk/SDToolBox/output_data.py
    • -10
    • +3
    /trunk/tests/test_output_data.py
    • -0
    • +1
    /trunk/SDToolBox/output_messages.py
    • -4
    • +23
    /trunk/SDToolBox/data_processing.py
    • -7
    • +25
    /trunk/tests/test_data_processing.py
3:38 pm

Carles Soriano Perez

Added logic and tests for the feature resampling in time.

Related to Issue [SDTOOLBOX-27]

Options
    • -27
    • +39
    /trunk/SDToolBox/data_processing.py
    • -0
    • +56
    /trunk/tests/test_data_processing.py
3:24 pm

Carles Soriano Perez

Changed lat-lon dimensions for each variable, added input_scenarios as parameter.

Related to Issue [SDTOOLBOX-24]

Options
    • -1
    • +1
    /trunk/SDToolBox/output_data.py
    • -0
    • +4
    /trunk/SDToolBox/input_data.py
2:51 pm

Carles Soriano Perez

Extended tests and input data definition.Improved extraction for consider gridded points.

Related to Issue [SDTOOLBOX-24]

Options
    • -1
    • +5
    /trunk/SDToolBox/input_data.py
    • -33
    • +25
    /trunk/tests/test_data_processing.py
    • -4
    • +17
    /trunk/tests/test_output_data.py
    • binary
    /trunk/tests/test_data/system_tests_nc/dummy_wave_multiple_file.nc
2:30 pm

Carles Soriano Perez

Improved extraction for consider gridded points.

Related to Issue [SDTOOLBOX-24]

Options
    • -3
    • +20
    /trunk/SDToolBox/extract_data.py
    • -1
    • +6
    /trunk/SDToolBox/input_data.py
    • -51
    • +74
    /trunk/SDToolBox/output_data.py
Monday 21 Oct 2019
5:12 pm

tiotto

Added PCA calculation and derivates as static methods

Related to Issue [SDTOOLBOX-29]

Options
    • -3
    • +5
    /trunk/SDToolBox/data_processing.py
4:43 pm

tiotto

Fixed review remarks

Related to Issue [SDTOOLBOX-29]

Options
    • -18
    • +52
    /trunk/SDToolBox/data_processing.py
    • -18
    • +19
    /trunk/tests/test_data_processing.py
4:00 pm

tiotto

Compute gradients of sea level pressure and PCA component Analysis to be tested with more consistent values

Related to Issue [SDTOOLBOX-29]

Options
    • -23
    • +22
    /trunk/SDToolBox/data_processing.py
10:17 am

Carles Soriano Perez

Fixed remaining bugs / adjustments of the code.

Related to Issue [SDTOOLBOX-24]

Options
    • -7
    • +8
    /trunk/SDToolBox/input_data.py
    • -0
    • +2
    /trunk/SDToolBox/output_messages.py
    • -7
    • +11
    /trunk/SDToolBox/output_data.py
    • -3
    • +16
    /trunk/SDToolBox/extract_data.py
Sunday 20 Oct 2019
8:52 pm

Carles Soriano Perez

Added max and mean resampling for xarray.

Related to Issue [SDTOOLBOX-27]

Options
    • -16
    • +64
    /trunk/tests/test_data_processing.py
    • -4
    • +44
    /trunk/SDToolBox/data_processing.py
Saturday 19 Oct 2019
5:04 pm

Carles Soriano Perez

Changed a few metadata values.

Related to Issue [SDTOOLBOX-24]

Options
    • -16
    • +17
    /trunk/SDToolBox/output_data.py
2:59 pm

Carles Soriano Perez

Improved Extract data functionality, joined everything by using inheritance and abstract classes.

* Removed outdated files.

* Added EARTH logic to extract its values.

Related to Issue [SDTOOLBOX-24]

Options
    • -0
    • +1
    /trunk/SDToolBox/output_messages.py
    • -71
    • +0
    /trunk/SDToolBox/extract_data_EARTH.py
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    /trunk/SDToolBox/extract_data.py
    • -42
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    /trunk/tests/test_extract_data_EARTH.py
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    • +34
    /trunk/tests/test_extract_data.py
Friday 18 Oct 2019
6:04 pm

Carles Soriano Perez

Refactoring for EARTH.

Related to Issue [SDTOOLBOX-24]

Options
    • -168
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    /trunk/SDToolBox/extract_data_EARTH.py
    • -4
    • +1
    /trunk/SDToolBox/input_data.py
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    /trunk/SDToolBox/extract_data.py
5:59 pm

tiotto

Implemented Compute gradients of slp and PCA.

Work in progress. To be tested.

Related to Issue [SDTOOLBOX-29]

Options
    • -0
    • +2
    /trunk/SDToolBox/output_messages.py
    • -0
    • +47
    /trunk/tests/test_data_processing.py
    • -3
    • +71
    /trunk/SDToolBox/data_processing.py
    • -2
    • +6
    /trunk/SDToolBox/extract_data_EARTH.py
4:23 pm

Carles Soriano Perez

* Further improvements by using abstract classes.

* Created a setter / getter in OutputData for variable_dict.

Related to Issue [SDTOOLBOX-24]

Options
    • -2
    • +2
    /trunk/tests/test_output_data.py
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    /trunk/SDToolBox/extract_data.py
    • -1
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    /trunk/tests/test_extract_data_EARTH.py
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    /trunk/SDToolBox/output_data.py
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    /trunk/SDToolBox/input_data.py
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    /trunk/SDToolBox/output_messages.py
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    /trunk/tests/test_extract_data.py
2:33 pm

Carles Soriano Perez

* Unified ERA5 extraction methods, as they are basically the same.

* Extracted InputData and OutputData for better maintainability.

** Extended / improved InputData validation.

* Renamed output_messages for file naming consistency.

Related to Issue [SDTOOLBOX-24]

Options
    • -16
    • +0
    /trunk/tests/test_main_unit.py
    • -37
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    /trunk/tests/test_extract_wind.py
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    /trunk/SDToolBox/main.py
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    /trunk/SDToolBox/extract_data_era5.py
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    /trunk/SDToolBox/data_acquisition.py
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    /trunk/tests/test_extract_data.py
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    /trunk/tests/test_extract_slp.py
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    /trunk/SDToolBox/extract_data.py
    • -67
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    /trunk/tests/test_extract_data_era5.py
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    /trunk/tests/test_input_data.py
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    /trunk/SDToolBox/input_data.py
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    /trunk/SDToolBox/extract_data_EARTH.py
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    /trunk/SDToolBox/output_messages.py
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    /trunk/SDToolBox/outputmessages.py
    • -23
    • +0
    /trunk/tests/test_main_acceptance.py
  16. … 5 more files in changeset.
8:50 am

Carles Soriano Perez

Removed reference to previous defined class.

Related to Issue [SDTOOLBOX-23]

Options
    • -4
    • +5
    /trunk/tests/test_extract_slp.py
Thursday 17 Oct 2019
4:05 pm

tiotto

Removed unneeded files (sea level pressure EARTH and era5) because of refactoring

Related to Issue [SDTOOLBOX-23]

Options
    • -112
    • +0
    /trunk/SDToolBox/extract_sea_level_pressure_EARTH.py
    • -201
    • +0
    /trunk/SDToolBox/extract_sea_level_pressure_era5.py
4:01 pm

tiotto

Added missing extract_data_EARTH

Related to Issue [SDTOOLBOX-23]

Options
    • -0
    • +237
    /trunk/SDToolBox/extract_data_EARTH.py
3:59 pm

tiotto

Added tests for EARTH and wind

Related to Issue [SDTOOLBOX-23]

Options
    • -0
    • +37
    /trunk/tests/test_extract_wind.py
    • -0
    • +42
    /trunk/tests/test_extract_data_EARTH.py
3:55 pm

Carles Soriano Perez

Added simple resampling for the feature given either a xarray or an outputdata object. Added simple unit tests.

Related to Issue [SDTOOLBOX-27]

Options
    • -0
    • +88
    /trunk/SDToolBox/data_processing.py
    • -0
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    /trunk/tests/test_data_processing.py
    • -0
    • +2
    /trunk/SDToolBox/outputmessages.py
3:33 pm

tiotto

Added EC-EARTH sea level pressure extraction

Related to Issue [SDTOOLBOX-23]

Options
    • -0
    • +4
    /trunk/SDToolBox/extract_sea_level_pressure_EARTH.py
    • -2
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    /trunk/SDToolBox/data_acquisition.py
    • -4
    • +2
    /trunk/SDToolBox/extract_data.py
3:32 pm

tiotto

Added extraction of ERA5 subset water levels

Related to Issue [SDTOOLBOX-18]

Options
    • -3
    • +42
    /trunk/SDToolBox/extract_data_era5.py
    • -1
    • +1
    /trunk/tests/test_extract_data_era5.py