SD_Toolbox

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Commits this week: 0
Total Committers: 4
Last Commit: 21 Oct 20
Commits this week: 0
Total Lines of Code (LoC): 18,020
Net change in LoC this week: 0

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6 properties
  • bugtraq:label = Jira Issue-ID
  • bugtraq:logregex = Issue \[([A-Za-z]+-\d+)\]
  • bugtraq:message = Related to Issue [%BUGID%]
  • bugtraq:number = false
  • bugtraq:url = https://issuetracker.deltares.nl/browse/%BUGID%
  • bugtraq:warnifnoissue = true
  • last updated a few seconds ago
All Commits Reviews
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Constraints: committers
 
Constraints: files
Constraints: dates
Wednesday 11 Dec 2019
3:37 pm

Carles Soriano Perez

Fixed returning NN masked indexes.

Related to Issue [SDTOOLBOX-35]

Options
    • -60
    • +47
    /trunk/SDToolBox/extract_data.py
9:26 am

Carles Soriano Perez

Fixed failing tests.
Options
    • -1
    • +6
    /trunk/tests/test_input_data.py
9:12 am

Carles Soriano Perez

Now it is needed to explicity specify the model variable datatype.

Related to Issue [SDTOOLBOX-36]

Options
    • -11
    • +12
    /trunk/SDToolBox/output_data.py
Tuesday 10 Dec 2019
3:50 pm

Carles Soriano Perez

Implemented logic for using a mask while applying nn.

* Extended NN algorithm with an eucledian approach.

* Moved input validations as they should not be in the constructor.

Related to Issue [SDTOOLBOX-35]

Options
    • -17
    • +129
    /trunk/SDToolBox/extract_data.py
    • -14
    • +6
    /trunk/SDToolBox/input_data.py
    • -2
    • +1
    /trunk/tests/test_extract_data.py
Monday 09 Dec 2019
4:40 pm

Carles Soriano Perez

Removed unnecessary file.
Options
    • -2
    • +2
    /trunk/SDToolBox/input_data.py
    • -57
    • +0
    /trunk/SDToolBox/main.py
Friday 25 Oct 2019
4:21 pm

Carles Soriano Perez

Added aggregation methods. could not set the values correctly so we are returning the predictor in a tuple.

Related to Issue [SDTOOLBOX-32]

Options
    • -1
    • +2
    /trunk/SDToolBox/data_processing.py
    • -59
    • +155
    /trunk/tests/test_predictor_definition.py
    • -59
    • +136
    /trunk/SDToolBox/predictor_definition.py
    • -0
    • +18
    /trunk/tests/TestHelper.py
3:12 pm

tiotto

Fixed review remarks

Related to Issue [SDTOOLBOX-33]

Options
    • -1
    • +1
    /trunk/SDToolBox/output_messages.py
    • -6
    • +6
    /trunk/SDToolBox/input_data.py
2:05 pm

tiotto

Added input coordinates as lon lat dictionary with tests

Related to Issue [SDTOOLBOX-33]

Options
    • -0
    • +3
    /trunk/SDToolBox/output_messages.py
    • -1
    • +1
    /trunk/tests/test_data_processing.py
    • -2
    • +2
    /trunk/tests/TestUtils.py
    • -57
    • +218
    /trunk/tests/test_input_data.py
    • -1
    • +8
    /trunk/SDToolBox/input_data.py
    • -6
    • +7
    /trunk/tests/test_output_data.py
Thursday 24 Oct 2019
5:06 pm

tiotto

Added input coordinates as lon lat dictionary of arrays to be tested

Related to Issue [SDTOOLBOX-33]

Options
    • -3
    • +15
    /trunk/SDToolBox/input_data.py
    • -2
    • +47
    /trunk/tests/test_input_data.py
5:03 pm

Carles Soriano Perez

Intermediate commit.

Related to Issue [SDTOOLBOX-32]

Options
    • -0
    • +1
    /trunk/tests/test_input_data.py
    • -190
    • +2
    /trunk/SDToolBox/data_processing.py
    • -0
    • +1
    /trunk/SDToolBox/output_messages.py
    • -159
    • +13
    /trunk/tests/test_data_processing.py
    • -0
    • +195
    /trunk/tests/test_predictor_definition.py
    • -0
    • +281
    /trunk/SDToolBox/predictor_definition.py
    • -0
    • +60
    /trunk/tests/TestHelper.py
10:30 am

tiotto

added check on years InputData parameters to accept nparray as long as list

Related to Issue [SDTOOLBOX-34]

Options
    • -2
    • +6
    /trunk/SDToolBox/input_data.py
    • -1
    • +6
    /trunk/tests/test_data_processing.py
    • -0
    • +18
    /trunk/tests/test_input_data.py
10:10 am

Carles Soriano Perez

Fixed unit and system test for grid spatial resampling.

Related to Issue [SDTOOLBOX-28]

Options
    • -4
    • +39
    /trunk/tests/test_data_processing.py
9:50 am

Carles Soriano Perez

Reworked on the grid spatial resampling, fixed failing tests for time resampling.

Related to Issue [SDTOOLBOX-28]

Options
    • -22
    • +11
    /trunk/SDToolBox/data_processing.py
    • -7
    • +114
    /trunk/tests/test_data_processing.py
8:56 am

Carles Soriano Perez

Updated environment to include conda-netcdf4 which removes the hdf5 dependency.
Options
    • -4
    • +3
    /trunk/setup.py
    • -1
    • +1
    /trunk/environment.yml
8:32 am

Carles Soriano Perez

Update of setup and environment to avoid HDF5 error on TeamCity
Options
    • -0
    • +1
    /trunk/environment.yml
    • -3
    • +4
    /trunk/setup.py
Wednesday 23 Oct 2019
5:28 pm

Carles Soriano Perez

Fixed simple feature spatial resampling.

Related to Issue [SDTOOLBOX-28]

Options
    • -1
    • +2
    /trunk/SDToolBox/output_data.py
    • -16
    • +68
    /trunk/SDToolBox/data_processing.py
    • -0
    • +1
    /trunk/tests/test_output_data.py
    • -9
    • +77
    /trunk/tests/test_data_processing.py
4:19 pm

tiotto

fixed compute PCA test

Related to Issue [SDTOOLBOX-30]

Options
    • -3
    • +3
    /trunk/SDToolBox/data_processing.py
    • -25
    • +4
    /trunk/tests/test_data_processing.py
3:53 pm

tiotto

updated calculation of derivatives and PCA. work in progress

Related to Issue [SDTOOLBOX-32]

Options
    • -22
    • +24
    /trunk/SDToolBox/data_processing.py
    • -1
    • +2
    /trunk/SDToolBox/output_messages.py
    • -36
    • +36
    /trunk/tests/test_data_processing.py
2:37 pm

Carles Soriano Perez

Improved the extraction of data for gridded. Now we set correctly the latitude / longitudes. Added gridded an non gridded test data.

Related to Issue [SDTOOLBOX-24]

Options
    • binary
    /trunk/tests/test_data/system_tests_nc/dummy_hs_gridded.nc
    • -4
    • +39
    /trunk/SDToolBox/extract_data.py
    • -2
    • +2
    /trunk/SDToolBox/input_data.py
    • binary
    /trunk/tests/test_data/system_tests_nc/dummy_hs_non_gridded.nc
    • -2
    • +7
    /trunk/SDToolBox/output_data.py
9:59 am

Carles Soriano Perez

Improved the input data class with some auxilair methods to extract information about variables. Adapted tests and improved the output data method for gridded inputs.

Related to Issue [SDTOOLBOX-24]

Options
    • -0
    • +8
    /trunk/SDToolBox/extract_data.py
    • -2
    • +38
    /trunk/tests/test_output_data.py
    • -1
    • +20
    /trunk/tests/test_input_data.py
    • -1
    • +14
    /trunk/tests/test_extract_data.py
    • -19
    • +20
    /trunk/SDToolBox/output_data.py
    • -3
    • +4
    /trunk/SDToolBox/input_data.py
Tuesday 22 Oct 2019
5:28 pm

tiotto

added aggregation methods for atmospheric data. work in progress

Related to Issue [SDTOOLBOX-32]

Options
    • -9
    • +81
    /trunk/tests/test_data_processing.py
    • -1
    • +9
    /trunk/tests/test_output_data.py
    • -8
    • +91
    /trunk/SDToolBox/data_processing.py
5:01 pm

Carles Soriano Perez

Added spatial resampling and a simple test for data processing.

Related to Issue [SDTOOLBOX-28]

Options
    • -1
    • +5
    /trunk/SDToolBox/output_data.py
    • -10
    • +3
    /trunk/tests/test_output_data.py
    • -0
    • +1
    /trunk/SDToolBox/output_messages.py
    • -4
    • +23
    /trunk/SDToolBox/data_processing.py
    • -7
    • +25
    /trunk/tests/test_data_processing.py
3:38 pm

Carles Soriano Perez

Added logic and tests for the feature resampling in time.

Related to Issue [SDTOOLBOX-27]

Options
    • -27
    • +39
    /trunk/SDToolBox/data_processing.py
    • -0
    • +56
    /trunk/tests/test_data_processing.py
3:24 pm

Carles Soriano Perez

Changed lat-lon dimensions for each variable, added input_scenarios as parameter.

Related to Issue [SDTOOLBOX-24]

Options
    • -1
    • +1
    /trunk/SDToolBox/output_data.py
    • -0
    • +4
    /trunk/SDToolBox/input_data.py
2:51 pm

Carles Soriano Perez

Extended tests and input data definition.Improved extraction for consider gridded points.

Related to Issue [SDTOOLBOX-24]

Options
    • -1
    • +5
    /trunk/SDToolBox/input_data.py
    • -33
    • +25
    /trunk/tests/test_data_processing.py
    • -4
    • +17
    /trunk/tests/test_output_data.py
    • binary
    /trunk/tests/test_data/system_tests_nc/dummy_wave_multiple_file.nc
2:30 pm

Carles Soriano Perez

Improved extraction for consider gridded points.

Related to Issue [SDTOOLBOX-24]

Options
    • -3
    • +20
    /trunk/SDToolBox/extract_data.py
    • -1
    • +6
    /trunk/SDToolBox/input_data.py
    • -51
    • +74
    /trunk/SDToolBox/output_data.py
Monday 21 Oct 2019
5:12 pm

tiotto

Added PCA calculation and derivates as static methods

Related to Issue [SDTOOLBOX-29]

Options
    • -3
    • +5
    /trunk/SDToolBox/data_processing.py
4:43 pm

tiotto

Fixed review remarks

Related to Issue [SDTOOLBOX-29]

Options
    • -18
    • +52
    /trunk/SDToolBox/data_processing.py
    • -18
    • +19
    /trunk/tests/test_data_processing.py
4:00 pm

tiotto

Compute gradients of sea level pressure and PCA component Analysis to be tested with more consistent values

Related to Issue [SDTOOLBOX-29]

Options
    • -23
    • +22
    /trunk/SDToolBox/data_processing.py
10:17 am

Carles Soriano Perez

Fixed remaining bugs / adjustments of the code.

Related to Issue [SDTOOLBOX-24]

Options
    • -7
    • +8
    /trunk/SDToolBox/input_data.py
    • -0
    • +2
    /trunk/SDToolBox/output_messages.py
    • -7
    • +11
    /trunk/SDToolBox/output_data.py
    • -3
    • +16
    /trunk/SDToolBox/extract_data.py